PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57107
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 202aa    MW: 22821.7 Da    PI: 6.68
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57107genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-0998138954
               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  OMO57107  98 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 138
               699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MSSMEDHILH DQLPLNPIIW QSSNFPFQTP PSTTTSNDQQ LGQQVVDEEE EPEEELSAMK  60
EMLYKIAAMQ PVDIDPATIR KPKRRNVRIS DDPQSVAARH RRERISEKIR ILQRLVPGGT  120
KMDTASMLDE AIRYVKFLKR QIRVLQQSHN QQPPCQWQVT PNKALVSTSS TSMETQQAGP  180
AGFSAFGATN GGNNPLCFNN HE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-48bHLH family protein