PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO57145

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 394aa MW: 43605.9 Da PI: 4.3258

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO57145	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.7	8.4e-48	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lp GfrFhPtd elv++yLk+k+ gkk+ + e+i+e+diyk+ PwdLp + +k+++ +w+fF++ +kky +g r nrat gyWk+tgkd++v+ ++e+ OMO57145 6 LPLGFRFHPTDVELVKYYLKRKILGKKFIF-EAIAELDIYKHAPWDLPdMsLLKTGDLKWFFFCPIEKKYGKGARFNRATVYGYWKTTGKDRTVVY-NEEV 104 699**********************877.89**********96346677888***********************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+ ktL+f++g+a++g +tdWvmheyrle OMO57145 105 VGMIKTLIFHRGKASNGDRTDWVMHEYRLE 134 ****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MGKYSLPLGF RFHPTDVELV KYYLKRKILG KKFIFEAIAE LDIYKHAPWD LPDMSLLKTG 60 DLKWFFFCPI EKKYGKGARF NRATVYGYWK TTGKDRTVVY NEEVVGMIKT LIFHRGKASN 120 GDRTDWVMHE YRLEEKELAS KGVSQDTYVL CAVFKKDGVG PRNGAQYGAP FKEEEWSDDD 180 DDENLFGTGS LSVFSKLAFG GASSSYAPES QCAEPSVLSS GLHTLPSPSV VNTDAATSLN 240 PGIDSNAHHV PAVTSDAELA LTFADAPQVP TITSDGTCMD APQVPAVTSN ANDVLTCVDV 300 TQIPMVVDAM AVPALMEAPQ IAHLPQVQES NDDIISMLDL FTEEDSEFFT YFSGEMTGAA 360 NNLSLESQVS EDNEIAWMLE SFKEDDNQNN LWYP

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MGKYSLPLGF RFHPTDVELV KYYLKRKILG KKFIFEAIAE LDIYKHAPWD LPDMSLLKTG  60
DLKWFFFCPI EKKYGKGARF NRATVYGYWK TTGKDRTVVY NEEVVGMIKT LIFHRGKASN  120
GDRTDWVMHE YRLEEKELAS KGVSQDTYVL CAVFKKDGVG PRNGAQYGAP FKEEEWSDDD  180
DDENLFGTGS LSVFSKLAFG GASSSYAPES QCAEPSVLSS GLHTLPSPSV VNTDAATSLN  240
PGIDSNAHHV PAVTSDAELA LTFADAPQVP TITSDGTCMD APQVPAVTSN ANDVLTCVDV  300
TQIPMVVDAM AVPALMEAPQ IAHLPQVQES NDDIISMLDL FTEEDSEFFT YFSGEMTGAA  360
NNLSLESQVS EDNEIAWMLE SFKEDDNQNN LWYP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	1e-88	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO57145