PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57197
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 214aa    MW: 24597.8 Da    PI: 4.2985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57197genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.31e-25111421128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat.gkdkevlsk... 95 
               lppGfrF Ptdeelv ++L +k+   +  ++  ++++++d++++ Pw+L+ k+  + ++++fFsk  +  +     +r + +gyWk+    +++++++   
  OMO57197  11 LPPGFRFCPTDEELVLHFLYPKALLLPnnCQYPNFLPQLDLHQLLPWELHGKALLSGNQYFFFSK-IRMGNY-GVCSREI-NGYWKELlDMEEPIFNNgaa 108
               79********************8888744666678**************9555555566555555.554444.4566655.5****761568999998777 PP

       NAM  96 kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                g++vg+kk +vf  g +ap + +t+W+m++y+l
  OMO57197 109 AGTKVGIKKLFVFNIGeEAPFAIQTNWLMQQYHL 142
               7778**********7758999***********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MEEDGSSMKQ LPPGFRFCPT DEELVLHFLY PKALLLPNNC QYPNFLPQLD LHQLLPWELH  60
GKALLSGNQY FFFSKIRMGN YGVCSREING YWKELLDMEE PIFNNGAAAG TKVGIKKLFV  120
FNIGEEAPFA IQTNWLMQQY HLCYDHLQGN NKLADSTWVL CRVHESTNKG NSQSMINYSD  180
EDEGTELSCL DEMFLSLDDD EDLDDITSMR LFGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-36NAC family protein