PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57253
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 254aa    MW: 28256.4 Da    PI: 6.9681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57253genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-11139186455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  OMO57253 139 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 186
               8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MDPPAMMSDA GYNLTEIWQY PVSESGIRRS QFGPGLGQFG DPNREVSGND PLGLEQRQLQ  60
QQQRASGLRR RRDGEDEAAK SDGDGKRLKA SGGRDENHDS KAETEPSSGK PLEQKAQAPE  120
PPKQDYIHVR ARRGQATDSH SLAERARREK ISERMKILQD LVPGCNKVIG KALVLDEIIN  180
YIQSLQRQVE FLSMKLEAVN SRMTPGIDVF PPKDYGQQTF DVTGMAFGSQ ATRDFSRGTS  240
PEWLHIGGGF ERTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.16e-96bHLH family protein