PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO57327

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 259aa MW: 29064.9 Da PI: 7.3663

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO57327	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H OMO57327 79 FECQYCLKEFANSQALGGHQNAH 101 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MEIDACSSLN SQTFHGENGY NSQAGFQEKK LKLFGFELNP DQNNNVEKSD ESVNSSNTAA 60 SSTSRETPPA SDHENSKKFE CQYCLKEFAN SQALGGHQNA HKKERMKKKR LQLQAKRASL 120 NCYLQPFQNT LSSPWYYDSS SNSSNYNQFT LYEESQISFN QYEQDAAAGG IRFNYGSDQN 180 IPIIPSSKWY TLQPSQMIPF QQQDCSSNMF TLTQSDRSRE IQNRAVTVKP SSKQSCKSLD 240 LQLGLSLQST IQSSSGSGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	1e-14	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO57327