PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO57337

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GeBP

Protein Properties

Length: 248aa MW: 27262.5 Da PI: 9.7595

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO57337	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	43.3	1e-13	105	148	54	97
DUF573 54 lveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + +K+rrL+kK+++ +++++gk+ fsk+hd+k ++lsk+iWg OMO57337 105 VADKVRRLRKKYRNLAERSNNGKDLLFSKAHDKKLYQLSKRIWG 148 679****************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MAGKPTKNPP PKDQESSSSN GGEEEEEESK TGTQNTPQTK PVEEEGDGKS GGGDSDGESE 60 FESDAGMAAK KSQEAIGTKM ISNSKAAQTP SVAAGKRGRE SDLAVADKVR RLRKKYRNLA 120 ERSNNGKDLL FSKAHDKKLY QLSKRIWGAK DTDEDMEDPK EKDLNLSDIV NNKSKSGSGG 180 IDTGTGTAMV DFNRTEEMVL KDCMTRLTAE KRANMEKKLK VIQLESYLKR SRLIRKLVKS 240 TLHAYKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-09	GeBP family protein

Link Out ? help Back to Top
Ensembl	OMO57337