PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57372
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 351aa    MW: 38536 Da    PI: 6.1885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57372genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08205252455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  OMO57372 205 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 252
               8*************************9....888999999999999999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MEPNAGKAKI RSNGTALDGD EAAALEALQF TDEIHRLISV PPTDNASSFT ALLELPAPQA  60
VELLHSPDSA KLIAAPAPAP NVEEFKGSFH FPSNSGLIER AARFSVFAGE SNNNINKTNS  120
PETTSNNSSA NPQKVVKSEP AETESSQPLV SDPTVEKQST KRKDREKKTK GSTKKSKTAA  180
NDSSEDAEKL PYVHVRARRG QATDSHSLAE RARREKINAR MKLLQELVPG CNKISGTALV  240
LDEIINHVQS LQRQVEFLSM RLAAVNPRID FNLDSIFTAE SGSLMDSNFQ SMVMPLMWPE  300
VPVNGNRQHY QQQWIDAIQQ QPVWGREEVC NNYITPENSL LSYDSSANSG K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.25e-96bHLH family protein