PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57662
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 250aa    MW: 27821.2 Da    PI: 5.3946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57662genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.9e-1854104155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               + y+GVr++k  ++Wv+e+r+p++   + r++lg+f  +e+Aa+a++ a+++l+g
  OMO57662  54 PVYRGVRQRK-GNKWVCEVREPYK---KSRIWLGTFTCPEMAARAYDVAALALRG 104
               68*******9.9*********765...6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MECLELDNSS SSSSCSSSCK PCSPDSESVD QALTVPVSHK RKAGRKKFKE TRHPVYRGVR  60
QRKGNKWVCE VREPYKKSRI WLGTFTCPEM AARAYDVAAL ALRGKSAALN FPDSASILPR  120
AKSCSPKDIQ SAALEAAEAL KTSTAAPIDI FSSQSTNIQF GCSSSQDHHK LFFVDEPIDQ  180
MNEENQLVVN HFSKDDHNPS FMDEEAIFNM PGLLDSMAEG LLLAPPTIQR EVDREDDTAY  240
YTTSIDLWEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.16e-43ERF family protein