PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO58323

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 291aa MW: 31232.2 Da PI: 4.6853

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO58323	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	265	288	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+ksF + L +H + H OMO58323 265 FSCGSCSKSFGSEGGLDSHKKAkH 288 89*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MEFWGLEVKA GKPIKSDPGA RYVIHLSQAS LGESKTKAES VPIYVTVKGK KLVLGTLAHQ 60 SCPQISLDLV FESEFELSHN WKNGSVHFLG YRTYVPPEEE YPFSEVNSFI LMTEFLDEES 120 EEELPVVAAE NGKAKPDAKT AKANAAVKIE EPNKKTEDED SDEDESDSDE DESDSDESDS 180 ESGDEMSMDD SDESDEDQDT PTPKKVASSK KRPAEAATPV SAKKAKSAAT PQKTDGKKGG 240 HTATPHPAKQ AGKSSAKSPK SGGQFSCGSC SKSFGSEGGL DSHKKAKHGG K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	4e-33	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO58323