PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO58700
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 147aa    MW: 16594.6 Da    PI: 6.5207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO58700genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-172063148
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
              s+y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++ 
  OMO58700 20 SKYLGVRRRP-WGRYAAEIRNPNT---KERHWLGTFDTAEEAAIAYDL 63
              79********.**********933...5******************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MENFPSLIYR NPKRSSRQSS KYLGVRRRPW GRYAAEIRNP NTKERHWLGT FDTAEEAAIA  60
YDLSSISFSG IERARTNFYY PFLILPSPPP STPPPLPTTP ELEGQGGHDQ TFKEINPNII  120
SEDDESLVIA TILQSFAQSA NCSNFCP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-29ERF family protein