PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO58742

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 66aa MW: 7773.98 Da PI: 10.3069

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO58742	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.8	6.2e-12	26	66	1	41
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41 ++Y++YA++ GFsvrk ++kks+++g+++ r++ C keg+r OMO58742 26 DYYKRYAYQKGFSVRKGATKKSEKDGNVIGRRLFCAKEGFR 66 69*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence
MTTMNGKDKM TKTMNVKEEM KEEAYDYYKR YAYQKGFSVR KGATKKSEKD GNVIGRRLFC 60 AKEGFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	8e-11	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO58742