PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO58744

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 227aa MW: 25147.3 Da PI: 8.0827

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO58744	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.4	3.7e-41	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lr+kC+++Cvlapyfp ++p+kfa vhk+FG snv k+l++l+ ++re+a++sl yeAe r+rdPvyG+vg+i+ lqq+l+ql+ +l+ +k+e OMO58744 7 PCAACKILRQKCTQECVLAPYFPPDNPQKFATVHKVFGKSNVAKILNELSVSQREEAVNSLSYEAEYRLRDPVYGCVGLISILQQRLKQLQYDLHFAKKE 106 7**********************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MSSAKSPCAA CKILRQKCTQ ECVLAPYFPP DNPQKFATVH KVFGKSNVAK ILNELSVSQR 60 EEAVNSLSYE AEYRLRDPVY GCVGLISILQ QRLKQLQYDL HFAKKELATF VPPHHQALLS 120 IFTQIPPPIL PQDVGIGHSI SPSCSSSSGA MPLMGISSDP YRFEGTGSSF DNPSYQIQTR 180 DHDPHVHGGR SFNQALVLPQ PQQGQQAHQS QQQRSGRHDD RSFDSSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-61	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO58744