PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO58795
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 129aa    MW: 14880.2 Da    PI: 10.8133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO58795genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-171465147
                     TSSS-HHHHHHHHHHHHHTTTT-H......HHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtW......ktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEd++l+ +v+++G g+W      ++Ia++++ +Rt++++k++w+ +
         OMO58795 14 KGAWTAEEDQKLIAYVQKHGEGSWrnvpagAAIAKYLP-KRTDNEIKNYWNAH 65
                     79********************8822223357889999.***********977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MGRTEFCTGD GLKKGAWTAE EDQKLIAYVQ KHGEGSWRNV PAGAAIAKYL PKRTDNEIKN  60
YWNAHLKKRL ANMGIDPVTH NPLFPDRNSN IVKPPMAHPE KFSQKMKPMH LINSPRRRRQ  120
GLARLRLYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61420.26e-33MYB family protein