PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59078
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 226aa    MW: 25279.4 Da    PI: 4.2895
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59078genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36.2e-397106199
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
               +C aCk+lrr+C+++Cv+apyf+ ++ + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i +lqqq+++l++e++ll +
  OMO59078   7 SCGACKFLRRRCTSECVFAPYFCYDEaTTHFAAVHKVFGASNVSKLLLHLPIHNRSDAAVTISYEALARIRDPIYGCVAHIYALQQQVANLQEEIELLIN 106
               6***********************9968******************************************************************998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MTGLGSSCGA CKFLRRRCTS ECVFAPYFCY DEATTHFAAV HKVFGASNVS KLLLHLPIHN  60
RSDAAVTISY EALARIRDPI YGCVAHIYAL QQQVANLQEE IELLINQMSN HAVEIPSNGN  120
FVENSYFDGE ILQFASLHET MSTVFYQEEQ ATLPNHPGFV TGNQVLETQL CEEIPPSFIL  180
EDQNFLCSDL YQNPPEINYY EGVESGILID YPCMGNSGTM AIQSWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-57LBD family protein