PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO59112

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 471aa MW: 53226 Da PI: 8.8669

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59112	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.7	5.5e-10	298	336	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 lFe ++yps +e+ LA+++gL+ +qV++WF N R + OMO59112 298 LFEHflHPYPSDSEKLMLARQTGLSRTQVSNWFINARVR 336 5665569******************************88 PP
2	BELL	85.8	4.9e-28	169	240	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er +++ k +kL +l+eV+k+Yk y++q+q v++sF++v glg+a+pY+ lA kai++hF +Lk ai +qi OMO59112 169 ERIQHRLKNSKLFLMLDEVYKKYKLYCQQMQSVVASFKCVSGLGNAAPYVCLAFKAIAKHFSSLKSAILHQI 240 688999****************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MAGNYDEPFH IPQQNRRNRL RVTLGNNNNH EEAQEQLPSQ QLSLLSSSSS SSHQPTFMQN 60 PRDIYYQMFN GHGLSLSLSS QHQENSINLP MNLDAEKGNG NSILGSFLKQ NGQMTSCVPL 120 GPFTGYASVL KSSKFLKPAQ QILDDFCGIN NKVFDFPLDS LADPITCSER IQHRLKNSKL 180 FLMLDEVYKK YKLYCQQMQS VVASFKCVSG LGNAAPYVCL AFKAIAKHFS SLKSAILHQI 240 RFTDKTVNNA SARKDNVPSL WTSDQIPPIH SLPFLQHPLW RSQRGLPDHA VAVLKAWLFE 300 HFLHPYPSDS EKLMLARQTG LSRTQVSNWF INARVRLWKP MVEEIHMLEL RQAQRTFSEA 360 TSQEVHDIQT KRARNNNFQT DHEQSQLQKT TSVSYKNLGD NNQHVGSVGG GNSSNFCLAL 420 SLNQNNGHID LAQPFPMNLC HNNFNFGTDG DQLSLKAGFD VERQNHHGKN F

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MAGNYDEPFH IPQQNRRNRL RVTLGNNNNH EEAQEQLPSQ QLSLLSSSSS SSHQPTFMQN  60
PRDIYYQMFN GHGLSLSLSS QHQENSINLP MNLDAEKGNG NSILGSFLKQ NGQMTSCVPL  120
GPFTGYASVL KSSKFLKPAQ QILDDFCGIN NKVFDFPLDS LADPITCSER IQHRLKNSKL  180
FLMLDEVYKK YKLYCQQMQS VVASFKCVSG LGNAAPYVCL AFKAIAKHFS SLKSAILHQI  240
RFTDKTVNNA SARKDNVPSL WTSDQIPPIH SLPFLQHPLW RSQRGLPDHA VAVLKAWLFE  300
HFLHPYPSDS EKLMLARQTG LSRTQVSNWF INARVRLWKP MVEEIHMLEL RQAQRTFSEA  360
TSQEVHDIQT KRARNNNFQT DHEQSQLQKT TSVSYKNLGD NNQHVGSVGG GNSSNFCLAL  420
SLNQNNGHID LAQPFPMNLC HNNFNFGTDG DQLSLKAGFD VERQNHHGKN F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	5e-77	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO59112