PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO59179

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 601aa MW: 67612.1 Da PI: 4.5556

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59179	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.4	5.8e-36	23	144	6	128
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkr.knratksgyWkatgkdkevlskkgelvglkk 104 rF+Ptd el++++Lk++v + + +++ i e+diyk+ Pw+Lp +++e+ wyfF+++ k++ tg r +nra k gyWk +gkd+++++ g+++g+ k OMO59179 23 RFRPTDVELLDDFLKRRVVQGRKFATKSIIELDIYKHAPWKLP--LTSEDFMWYFFCPAVMKKHgTGLRsSNRASKFGYWKGSGKDRAIKC-MGKTMGVMK 120 9**************88777556588***********..556788**9987665367651678**************.9999* PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 tLvfy+g+ap+ge+t+Wv+heyrl OMO59179 121 TLVFYRGKAPNGERTNWVVHEYRL 144 ********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MAIPSKGGKR ILMGQLEEAK YRRFRPTDVE LLDDFLKRRV VQGRKFATKS IIELDIYKHA 60 PWKLPLTSED FMWYFFCPAV MKKHGTGLRS SNRASKFGYW KGSGKDRAIK CMGKTMGVMK 120 TLVFYRGKAP NGERTNWVVH EYRLDDEDSY VICVVFQKDN IGPTRGFQYA AQSPDSSCAP 180 VLDADVPSPM SVAFMDDKIV PESTGAPQLA SQVQESSFDS SDSYLQYLEG YIETESLNDG 240 KDEEASHQLA MVQELNHYIQ SPPLQRDDGE CFMYDCQGND GELALVPQVQ EANSCVQSPL 300 QLFDRDHHTF MYDGQGNENG EAPHQLTLLP QVQMSNHNFP SQDVTLVPRV QISNHNFPSQ 360 DVVPQVQISN NNFPSSQDVT LVPQVQISNH YFPSPLESTF INEGQGNYGN FPIYDGNEML 420 VSYESQRNNN GLDSNRLNQD VTRGSSWQHQ TQYGHGNNGG SSNFNFQGDY GNFPVYDGDD 480 NSLLLPSYQS QNSWNNNVLD SNRLNQDVTT SSSLQHQTQY GHGNYGGSSN FQGNFPVYDG 540 DDYSLLFPSY QPQNSWNNND QLDKFNLLDQ DVTASSISQP ETQGQDNYGG SSNFIQGNCT 600 F

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MAIPSKGGKR ILMGQLEEAK YRRFRPTDVE LLDDFLKRRV VQGRKFATKS IIELDIYKHA  60
PWKLPLTSED FMWYFFCPAV MKKHGTGLRS SNRASKFGYW KGSGKDRAIK CMGKTMGVMK  120
TLVFYRGKAP NGERTNWVVH EYRLDDEDSY VICVVFQKDN IGPTRGFQYA AQSPDSSCAP  180
VLDADVPSPM SVAFMDDKIV PESTGAPQLA SQVQESSFDS SDSYLQYLEG YIETESLNDG  240
KDEEASHQLA MVQELNHYIQ SPPLQRDDGE CFMYDCQGND GELALVPQVQ EANSCVQSPL  300
QLFDRDHHTF MYDGQGNENG EAPHQLTLLP QVQMSNHNFP SQDVTLVPRV QISNHNFPSQ  360
DVVPQVQISN NNFPSSQDVT LVPQVQISNH YFPSPLESTF INEGQGNYGN FPIYDGNEML  420
VSYESQRNNN GLDSNRLNQD VTRGSSWQHQ TQYGHGNNGG SSNFNFQGDY GNFPVYDGDD  480
NSLLLPSYQS QNSWNNNVLD SNRLNQDVTT SSSLQHQTQY GHGNYGGSSN FQGNFPVYDG  540
DDYSLLFPSY QPQNSWNNND QLDKFNLLDQ DVTASSISQP ETQGQDNYGG SSNFIQGNCT  600
F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.3	1e-46	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO59179