PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59195
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 241aa    MW: 27104 Da    PI: 4.4724
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59195genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-18143145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++W++eEd +l++a+k+ G++ W+ Ia++++ gRt++ +k++w+
         OMO59195  1 KDSWSEEEDIILIEAHKEIGNK-WAEIAKRLP-GRTENTIKNHWN 43
                     679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
KDSWSEEEDI ILIEAHKEIG NKWAEIAKRL PGRTENTIKN HWNATKRRQY SRRKGKETGV  60
SLLQTYIKSV DSSSSSNSTS STSAPKDKGK GKRSLGFDFE PNHDDDDDEH HDADDHDHDQ  120
LESSDYSPIM PKDDDEHQWG VGIYDNNNNN DDDDDENQPM NFSFDHSNAV FGNRSFQSML  180
EQDNHHHVAG SGSGSGSVGS NNNVNNAMDF EMPLMEMDSL METGAGRKEL DLLEMISQGK  240
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.16e-31MYB family protein