PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59222
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 151aa    MW: 16545.8 Da    PI: 9.0136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59222genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.24.9e-1796571128
       NAM  71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
               ++ +n + k gyWk +gkd++++  k+e  g+ ktLvfy g++pkge+t+Wv+hey+l
  OMO59222   9 KSLPNHSSKFGYWKGSGKDRHIKY-KEEMLGVMKTLVFYCGKSPKGERTNWVIHEYSL 65 
               5567778899**************.8999***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MQKKRGSVKS LPNHSSKFGY WKGSGKDRHI KYKEEMLGVM KTLVFYCGKS PKGERTNWVI  60
HEYSLGKGVQ NYVICVVFQK DGFGRTKGFQ YAASASVLDA FASVLDASSP VVPIDVPESM  120
GAPQVPSQAS QVEESLDSNS DSLVGYLNES L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.21e-24NAC family protein