PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59460
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23337.5 Da    PI: 7.8645
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59460genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.8e-131862145
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              k ien+  + + fskRr gi KK  EL ++C+ae+ +++fs+ g+
  OMO59460 18 KLIENEDDKMIAFSKRRSGIYKKVCELNTMCGAEIGILVFSPAGN 62
              569***************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MTAGLVKKTK GRQKIDIKLI ENEDDKMIAF SKRRSGIYKK VCELNTMCGA EIGILVFSPA  60
GNPFCFGHPS FESIANRFLN QSPSPNNNTQ PLVEAHRKAR VEQLTMRFNE VTGQLDAEKN  120
KGKKIDEMTK GQETQGWWKA PIEQLSDQQE LLDSYSNFEK FHSIIISNMN EKSARNGDGG  180
TCSSMVAPMD PNVGVPPDTF PPGLGPSGCQ L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-34M-type_MADS family protein