PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59467
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 221aa    MW: 24373.7 Da    PI: 7.4361
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59467genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.5e-151964247
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
               ie +  + +tfskRr gi KKA EL +LC+++  +++fs+ gk +
  OMO59467 19 LIEKEEDKLITFSKRRSGIYKKACELNTLCGTDTGILVFSPAGKPF 64
              588889999*********************************9855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MNAGLVKKTK GRQKIEMKLI EKEEDKLITF SKRRSGIYKK ACELNTLCGT DTGILVFSPA  60
GKPFSFGHPS FESLANRFLN QSPPPNNNTH PLVEARRKAK VEQLAMQYNE VSDQLDAEKY  120
RGKMIDEMTK GNETQGWWKA PVDQLSEQQE LLDLYSNYEN VLGIMLSKMN VKGAGDGGIF  180
SSTVASMDPA DQHTDVFATN PNVGVLPATF PPGLGPAGCQ F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-36M-type_MADS family protein