PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59579
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 336aa    MW: 37790.1 Da    PI: 7.0661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59579genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-20186236255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ kl+g
  OMO59579 186 HYRGVRQRP-WGKFAAEIRDPTRRG--SRIWLGTFDTAIEAAKAYDRAAFKLRG 236
               8********.**********97665..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MDSSSEVYSS QLQYLKQYLL DEFSPVGSAS SHLSFENQWI TEAKPNFEVS STSQSQTSSS  60
DSSVTVSNFD CLNDDDDFFK FSPKFPGFQL KSNDAFEFES KPKIIDLTSP KPSSSNSSAF  120
EFEVKPQISQ LSATKPQLSS KSSSQNRKPE LKISLPHNNK VEWIQFGKPE IVQAEQKKSN  180
SEEKKHYRGV RQRPWGKFAA EIRDPTRRGS RIWLGTFDTA IEAAKAYDRA AFKLRGSKAI  240
LNFPLEAGRL DARPVDGDRK RSRDDGEGEE RHVKAVKREN DDVTKARDNV EVPLTPSCWK  300
GFLDLDNNDM NAIFNVPLLS PLSPHPALGF PQVMVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-56ERF family protein