PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59626
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 235aa    MW: 26053.5 Da    PI: 4.5816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59626genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-1857106255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  OMO59626  57 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKG 106
               69****998.**********843...6**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MDSEFEPQSS ASTSSSTPAN DSSSSSSEFN KSTRGNESKR KAKNDEVEQQ GNSKHPTYRG  60
VRMRQWGKWV SEIREPRKKS RIWLGTFPTA EMAARAHDVA ALTIKGKSAF LNFPEIAHEF  120
PRPVSSSPKD IQAAAAKAAA LSFTKSHEDE EIEAESSSQV DQMVPRSPAS TVTSQEDSPI  180
INNDDAFIDL PDLLLDMNHQ IDEFWGSLSW QLASGTDDPV GNGFGYEEPC LWEYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-57ERF family protein