PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59635
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 355aa    MW: 39124.8 Da    PI: 7.9884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59635genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029239260122
               EEETTTTEEESSHHHHHHHHHH CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
               ++C++C+k+F+++++L+ H ++
  OMO59635 239 HRCGKCKKVFRSHDTLVEHKKK 260
               79*****************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MEKHKCKLCA RTFSNGRALG GHMKGHLATH PLPPKSSTTT HQQPLGHRTD SANSSSSSSS  60
GEEQDEKNRE VIEEKSLGYG LRENPKKSFR FADPEFSFAV DSGSVVQDRE SETESRNPTR  120
RRSKRNRKVA VAVVVTTNNA ATMEEIIKKP KFESKPSFVE SPTEPEPVSS VSDHTSPDED  180
VAMCLMMLSR DVWKPNNNNT EQKSVELLLE ESEEEIELNN KNIKTTEELF SNKKIRGKHR  240
CGKCKKVFRS HDTLVEHKKK LGCCETKNAG KVSASAAAAA VNVGNDKIFE CPFCYRVFGS  300
GQALGGHKRS HLLAAVASSS NAAAENSSIK FETKLIDLNL PAPMEDDEFS VVSDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-24C2H2 family protein