PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO59895

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 354aa MW: 38892.2 Da PI: 7.9883

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59895	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	228	281	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OMO59895 228 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 281 9****************************************************7 PP
2	Myb_DNA-binding	47.3	4.9e-15	229	280	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ OMO59895 229 RMRWTSSLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 280 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MPLEGVFVEP SNSNQIPDLS LHISPPNAST SSISSNKNSE VMDKSFNLLS RHEVGGKSMR 60 NDLQQAYTEL SLAHNPTNVA MDQELQFSRR NHSSAFESSS LLDNGVRPIK GIPIYHQSRS 120 FPFATIENLS QRELSRDPKM GFYQIPYHNH PSSSPSLSSS PYFRGGLDPI SSILSSGPNQ 180 YSSPSYYRNG ISMDGFKSQQ LHPHYGVGSS HGSRFLPKFP TKRSMRAPRM RWTSSLHARF 240 VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDKPAP SSGQSDGSGE 300 EDISTVVSSS SDCGVADKTG ISADGALLQL ESDHFPSSTD LWSNSSRYIH IPGS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MPLEGVFVEP SNSNQIPDLS LHISPPNAST SSISSNKNSE VMDKSFNLLS RHEVGGKSMR  60
NDLQQAYTEL SLAHNPTNVA MDQELQFSRR NHSSAFESSS LLDNGVRPIK GIPIYHQSRS  120
FPFATIENLS QRELSRDPKM GFYQIPYHNH PSSSPSLSSS PYFRGGLDPI SSILSSGPNQ  180
YSSPSYYRNG ISMDGFKSQQ LHPHYGVGSS HGSRFLPKFP TKRSMRAPRM RWTSSLHARF  240
VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDKPAP SSGQSDGSGE  300
EDISTVVSSS SDCGVADKTG ISADGALLQL ESDHFPSSTD LWSNSSRYIH IPGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	2e-49	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO59895