PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60177

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CO-like

Protein Properties

Length: 429aa MW: 47106 Da PI: 4.9977

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60177	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.2	2.1e-05	2	42	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 e+ C+ + ++ +C+ ++ lC +C H+ H OMO60177 2 EPLCDFCRGVRAVVYCKPDSARLCLSCDRCVHSAnllsrrH 42 689****99****************999545555555 PP
2	zf-B_box	19.1	2.8e-06	46	78	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee..H 34 C++++++++ C d++ lCe C ++ OMO60177 46 LLCEKCNSQPAVVRCLDDKLSLCEGCDWNGngC 78 57************************8766554 PP
3	CCT	63.2	7.8e-22	373	416	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ OMO60177 373 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 416 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MEPLCDFCRG VRAVVYCKPD SARLCLSCDR CVHSANLLSR RHARSLLCEK CNSQPAVVRC 60 LDDKLSLCEG CDWNGNGCSS LEHRREALNS YTDCPSLVEF RRIWSSVLDT SSSGSFDAGS 120 SVGALPANDT CVVNCLNQRE QRGSFGMVDA KLNEQDPCPK LKPWMGPSSL IPTNANYMPY 180 CRDQEPLFSE GSNMPKGCSD LKDFKLPDGD DLCEGLDMND VNLNFETADE IFGCPQDQTR 240 YQFENVGTDC LLMEKNLSVT ESDGPIESTL ETSSSGQKDC LPPFPSSEIG GSASVMAAMT 300 ATSNCMFMNP GCGRNINLGY PVGQIPSTIA LSLSNITGES SAADYQDCGL SPAFLTAESP 360 WESNLEASCP QARDKAKMRY NEKKKTRTFG KQIRYASRKA RADTRKRVKG RFVKAGDAYD 420 YDPLVPRNF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MEPLCDFCRG VRAVVYCKPD SARLCLSCDR CVHSANLLSR RHARSLLCEK CNSQPAVVRC  60
LDDKLSLCEG CDWNGNGCSS LEHRREALNS YTDCPSLVEF RRIWSSVLDT SSSGSFDAGS  120
SVGALPANDT CVVNCLNQRE QRGSFGMVDA KLNEQDPCPK LKPWMGPSSL IPTNANYMPY  180
CRDQEPLFSE GSNMPKGCSD LKDFKLPDGD DLCEGLDMND VNLNFETADE IFGCPQDQTR  240
YQFENVGTDC LLMEKNLSVT ESDGPIESTL ETSSSGQKDC LPPFPSSEIG GSASVMAAMT  300
ATSNCMFMNP GCGRNINLGY PVGQIPSTIA LSLSNITGES SAADYQDCGL SPAFLTAESP  360
WESNLEASCP QARDKAKMRY NEKKKTRTFG KQIRYASRKA RADTRKRVKG RFVKAGDAYD  420
YDPLVPRNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-107	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO60177