PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60266
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 334aa    MW: 38699.4 Da    PI: 5.3027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60266genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.81.2e-2041322128
       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy...kvePwdLpkkvka..eekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
               ++G+rF+P++ee+ ++yL + ++g++++    + e+diy   + ePw+L k  ++   ++e  + F++ +kk  + ++  r++  g W+++gk +ev +++
  OMO60266   4 ARGVRFRPEEEEIFCHYLYPFINGDSIPY--EFGEIDIYggeNKEPWNLFK-WNEdsPQTESfWVFTRLRKK--SASKIDRIAGCGSWNQKGKRNEVRDSE 99 
               68************************999..36666666333689****64.33311333441445555444..457999*99****************** PP

       NAM  97 gelvglkktLvfy.kgrapkgektdWvmheyrl 128
               g+l g  k  +f  k+++ ++ + +W+mhey++
  OMO60266 100 GRLLGYEKYYIFKgKKDSDDPLNLKWMMHEYSV 132
               ************95556777889********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MSMARGVRFR PEEEEIFCHY LYPFINGDSI PYEFGEIDIY GGENKEPWNL FKWNEDSPQT  60
ESFWVFTRLR KKSASKIDRI AGCGSWNQKG KRNEVRDSEG RLLGYEKYYI FKGKKDSDDP  120
LNLKWMMHEY SVEPEGSGNL VFCQIKYELN KKRKRSDDLD DEYQGSSSSS VKKIGLDLDC  180
QNNHQNHPVP ILVISQNKNQ NEEVILEELP VDDADHYLQL PGPAATDHVT YELNPVDPSD  240
YHEWNPVLID NLFNPEPEPL LDNSGWDWRS CIIEHNSISM DAFLGVSWHI LLGRNLLIKH  300
STPPSDQMTT LDIKTKKCRS GRKKQVQQQV SKPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156KKRKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-16NAC family protein