PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60420
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 246aa    MW: 27934.1 Da    PI: 4.535
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60420genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l+d+++++G g W+t ++  g++R++k+c++rw++yl
         OMO60420 15 RGAWTAIEDQILIDYINLHGEGKWRTLPKAAGLKRCGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding49.59.6e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
         OMO60420  68 RGNITLDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWHSV 112
                      7899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRKPCCSKE EGLNRGAWTA IEDQILIDYI NLHGEGKWRT LPKAAGLKRC GKSCRLRWLN  60
YLRPDIKRGN ITLDEEDLII RLHNLLGNRW SLIAGRLPGR TDNEIKNYWH SVLSKRLLSS  120
SQVKEANRND DKINVIDAKL EHETALESES SDGSFTLPSS DEEINASFNF RMDFEIGEIS  180
NGSEGFASDF TQLCGYDFTD MNAEICEYGK YGKNDCCEAM VENDYVELEA NNFNLDSDFG  240
FLDAFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-62MYB family protein