PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60494
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YC
Protein Properties Length: 143aa    MW: 16081.4 Da    PI: 10.2699
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60494genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.54.1e-158921598
     NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
              d  + e+P  r+kki+k d+d++++ +ea  l+s + +lf+  l+ rs   a e+k++t+k   + +av+r   + dfl+d  p 
  OMO60494  8 DPVQPEFPRGRVKKIMKLDKDINKVNSEALLLISCSTNLFLQFLAERSAEVATEKKKKTVKLDHLRTAVKRHRpTSDFLLDSLPM 92
              556789***************************************************************9975489*****9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MAEDEAVDPV QPEFPRGRVK KIMKLDKDIN KVNSEALLLI SCSTNLFLQF LAERSAEVAT  60
EKKKKTVKLD HLRTAVKRHR PTSDFLLDSL PMPSEPTQSV ARTVADRDRS RPVSDKPAPA  120
GTRRIDQFFR KTGNEAPVQI NDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.16e-45NF-YC family protein