PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60550
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 160aa    MW: 17645.8 Da    PI: 10.4364
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60550genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.22.9e-12127149123
               ---SS-EEEEEEE--TT-SS-EE CS
      WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
               ldDgy+WrKYGqK vk+++fpr+
  OMO60550 127 LDDGYRWRKYGQKAVKNNKFPRA 149
               59********************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MENFHGLFAT SSPLSSSLSL NMSNSLGSYG EFEVGNKGNN GFLLGLMADH HIDHQVPASF  60
NVSNISDHQN KIISFPDQIN GGGLAAAGGN NNNNETEVMK GVGKKKGDKK VRKPRYAFQT  120
RSQVDILDDG YRWRKYGQKA VKNNKFPRAK ALYFARHSVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.12e-20WRKY family protein