PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60609

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 236aa MW: 26117.7 Da PI: 8.407

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60609	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1.1e-19	77	131	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k OMO60609 77 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 131 78889************************************************98 PP
2	HD-ZIP_I/II	118.5	3.8e-38	77	165	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ OMO60609 77 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 165 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MAVLPTNCSS NLELTISVAG FSSSPSLPSS GDHGVCTVRD LDINQVPSGG AEDDQWITAS 60 MEDEEESCNN INGVPPRKKL RLTKEQSRLL EESFRQNHTL NPKQKEALAM QLKLRPRQVE 120 VWFQNRRARS KLKQTEMECE YLKRWFGSLT EQNRRLQREV EELRAMKVGP PTVISPHSCE 180 PLPASTLTMC PRCERVTTTA LDKGPTKMTA ATTTATALSS KVGTSALQSR PSSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	6e-80	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO60609