PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60710
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARR-B
Protein Properties Length: 673aa    MW: 73076.6 Da    PI: 6.4501
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60710genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28228281155
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  OMO60710 228 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 281
               79*******************.********************************8 PP
2Myb_DNA-binding40.27.8e-13230280148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qk++
         OMO60710 230 RVVWSVELHQQFVSAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQKFR 280
                      678**********************************************97 PP
3Response_reg75.91.5e-25451531109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++++ +l++  y +v+++++++ al+ll+e++  +D+il D+ mp+mdG++ll++   e  +lp+i+++a g  + + + ++ Ga 
      OMO60710  45 VLVVDDDITCLRIVEHMLRRCLY-NVTTCSQAKVALNLLRERKgcFDVILSDVYMPDMDGYKLLEHVGLEM-DLPVIMMSADGRTSAVMKGIRHGAC 139
                   89*********************.*******************************************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
      OMO60710 140 DYLIKPIREEELKN 153
                   ***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    
MAAMQRLAQS SVSTSAAATS NYGGSSSFRG VETVISDQFP AGLRVLVVDD DITCLRIVEH  60
MLRRCLYNVT TCSQAKVALN LLRERKGCFD VILSDVYMPD MDGYKLLEHV GLEMDLPVIM  120
MSADGRTSAV MKGIRHGACD YLIKPIREEE LKNIWQHVVR KKWNENKELE HSGSLDDNDR  180
HKRGIDDAEY ASSVNDGTDV SFKSQKKRSI TKEEEEENEN DDPSSSKKPR VVWSVELHQQ  240
FVSAVNQLGI DKAVPKRILE LMNVPGLTRE NVASHLQKFR LYLKRISGVA QQGGIGNPLC  300
GPVEPNVKIG SLGRFDIQAL AASGQIPPQT FAALHAELLG RPTGNLVTAM DQPALLQASL  360
QGPKCIPVEH GVAFGQPLVK CQSNISKHFP QSIVSVEDVP SGFGTWPSSN ISAAGPSSSL  420
GGLSSQNGNM LIDLLHQQQQ QRQLQKPQLQ QQSAVPEPSR LINVQPSCLV VPSQSSASFQ  480
AGNSPASVNQ NGSFNKTAVI DYSLLSPQSN NSSLNIGQVT DGDLQTTGIL SGYIPPASIS  540
PSVSSCSINA DNCSSQQLQN SSMTFKASRQ LPIVHSLPDV QGSYGAVKLG EVLDQAPFAN  600
LGYNDKGTCL PTRFAVDEFQ SPMSSSSRGK IFAENIGTRV KQEPNMEFVD NSRVGIPMLQ  660
QFPPNELMSV FTE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-121ARR-B family protein