PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60753

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 560aa MW: 60336.4 Da PI: 9.7027

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60753	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H OMO60753 80 FICEVCNKGFQREQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	13.2	0.00027	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ OMO60753 156 WKCEKCSKRYAVQSDWKAHSKTC 178 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MAASSSSGAA FFGIREEDQN NQMKQQQQPQ HSSTTPTNSS SGPPPPPQAP PPQKKKRNQP 60 DPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLRQ KTTKEVKRKV 120 YLCPEPTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT 180 REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPPSLNP IANHLYGNSS LNLSQQVGSQ 240 ISSIHHQDQN NKSAGDILRL GGAASRNTQF DHFLPPSAMG SSSTSSFRSH HHHQQSMIPS 300 AAGFFINPDS NNNPSFPGLM QFQDHHNNSP SAANLFNLGF SNNNNNGTGN SDNSLSSSGL 360 LMSDHFNSGN SHDIMGDHQI PSLFSSSVQN NNNMAVTQMS ATALLQKAAQ MGSTSSSNSA 420 SLLSSFGSSS STTSTKPSNY GGILGDHSGG NNLHELINSI ASGNSSIFGT APGGVNTYSG 480 AEKQQQNLNA ASGGGGSDRL TRDFLGVGQI LRSMSGGGGT VSPQQQQGMG SKRNNMTVPP 540 PQPPPQQTEQ QSFEGGGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MAASSSSGAA FFGIREEDQN NQMKQQQQPQ HSSTTPTNSS SGPPPPPQAP PPQKKKRNQP  60
DPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLRQ KTTKEVKRKV  120
YLCPEPTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPPSLNP IANHLYGNSS LNLSQQVGSQ  240
ISSIHHQDQN NKSAGDILRL GGAASRNTQF DHFLPPSAMG SSSTSSFRSH HHHQQSMIPS  300
AAGFFINPDS NNNPSFPGLM QFQDHHNNSP SAANLFNLGF SNNNNNGTGN SDNSLSSSGL  360
LMSDHFNSGN SHDIMGDHQI PSLFSSSVQN NNNMAVTQMS ATALLQKAAQ MGSTSSSNSA  420
SLLSSFGSSS STTSTKPSNY GGILGDHSGG NNLHELINSI ASGNSSIFGT APGGVNTYSG  480
AEKQQQNLNA ASGGGGSDRL TRDFLGVGQI LRSMSGGGGT VSPQQQQGMG SKRNNMTVPP  540
PQPPPQQTEQ QSFEGGGNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-110	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO60753