PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60792
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31619.4 Da    PI: 10.2574
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60792genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind338.22e-10312821301
  GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalll 86 
                mddd +  rn+g+yep+ +s+k +lglqlm+s+aerd+k+    r+ nl +++++a +++rd         m++  rd +++          +k++++l+
   OMO60792   1 MDDDPTF-RNWGFYEPTpPSFKGHLGLQLMTSMAERDTKPfipgRDPNL-MINPNAGFHPRDcvvseatipMNY--RDGWISR---------DKFFSMLP 87 
                8888664.********99*******************************.*******************99999..9****99.........999**999 PP

  GAGA_bind  87 venslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                 +        +++++l++t+ ++sl       l++++ + +r+e+   +  + e+++ +ke  + kkrq +++pk++k kk++k    +k+++++    +
   OMO60792  88 PTV-------PNYGMLPETSAAHSLPI-----LQPPPDPsTRDER--MVGRV-EEPPANKEGVQLKKRQAGATPKTPKPKKPRK----PKDNTNSTV--Q 166
                443.......679**********9988.....8888888344444..34444.457778888888999***********99999....333334444..6 PP

  GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDL 285
                r+k  kks+d+ +ng ++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae y++snp+DL
   OMO60792 167 RVKPAKKSMDIKINGYDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFSNPIDL 266
                89************************************************************************************************** PP

  GAGA_bind 286 kdhWAkHGtnkfvtir 301
                ++hWA+HGtnkfvtir
   OMO60792 267 RTHWARHGTNKFVTIR 282
                ***************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDDDPTFRNW GFYEPTPPSF KGHLGLQLMT SMAERDTKPF IPGRDPNLMI NPNAGFHPRD  60
CVVSEATIPM NYRDGWISRD KFFSMLPPTV PNYGMLPETS AAHSLPILQP PPDPSTRDER  120
MVGRVEEPPA NKEGVQLKKR QAGATPKTPK PKKPRKPKDN TNSTVQRVKP AKKSMDIKIN  180
GYDMDISGIP IPVCSCTGTP QQCYRWGCGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK  240
MSQGAFKKVL EKLAAENYNF SNPIDLRTHW ARHGTNKFVT IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-111BBR-BPC family protein