PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60816

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 251aa MW: 27049.9 Da PI: 7.1276

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60816	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H OMO60816 95 FSCNYCRRKFYSSQALGGHQNAH 117 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MTPPNPGLES GNDSEASSQV ASNISAHEPS PDPSKDSTTT TSCLTNPVKA QPDSGSLSLD 60 LTLNFSPSDV EMKGTGEPRS DIATNNSSST IPRVFSCNYC RRKFYSSQAL GGHQNAHKRE 120 RTMAKRAMRM GIFSDRYTSL ASLPLHGSAF RSLGIKAHSA MHQGIIPSQR SIDTRAVARF 180 DQGYYGMPMF MEDDDVDLFW PGSFRQVNEG VSGTPPLQFA QNSTQTSNSG FVAAASSPRT 240 DSSSPDLTLK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	7e-49	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO60816