PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60905
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family DBB
Protein Properties Length: 249aa    MW: 27260.2 Da    PI: 4.0273
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60905genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-061757438
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
              r C++++    +lfC++   +lC+dC +++H        H+
  OMO60905 17 RACDTCQAAACTLFCHTHAAYLCNDCDQQIHAAdsmalsHQ 57
              57******99*********************6666667776 PP
2zf-B_box29.41.6e-0958104242
  zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 
               + ++C+ +e+ ++   C+ +   lC +C +e+H +       Ht+vp+
  OMO60905  58 RVWICTVCENAPAAVTCRADAASLCINCDVEIH-SvnplarrHTRVPI 104
               5789*****************************.44888889**9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MLKVCSGGDG FPTNWARACD TCQAAACTLF CHTHAAYLCN DCDQQIHAAD SMALSHQRVW  60
ICTVCENAPA AVTCRADAAS LCINCDVEIH SVNPLARRHT RVPIPPLSGL ACSTSNTYQD  120
ELPGLMFDMA NEIAAAPEMN EGIDEDETDS WLLLEPDNTD NQTVSGFTYG EQVDEYMDVM  180
DSCTEYQCQE QCSDQQQLPS FNFPEDSGSD SVVSVRTFEP KKQSPQRGET IAAAANIPAV  240
SEYLLQHRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-47CO-like family protein