PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60970
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 232aa    MW: 26191.1 Da    PI: 9.2098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60970genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-1657106255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  OMO60970  57 RYLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDSAARLLRG 106
               689******.7*********42...36***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MNSMDSSRTT QSQSPCKDQN SKQLDQSESF HDEDGDHQKI RSKKKIPKIS IKNNGRRYLG  60
VRQRPSGRWV AEIKDSSQKL RLWLGTFDRA EEAALAYDSA ARLLRGRNAK TNFEYNHGVI  120
NTYEQNCNLL GKNPRLFRLL QLTIMKNHAR STCHKSNGSL VPAWINNQSN VNGFDTLVEE  180
TIFCSSDDHH DEGSNNKLCQ LSLGSSKVYS SVVVAPSFST SLDHEKDSQD AK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-15ERF family protein