PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61001

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

DBB

Protein Properties

Length: 278aa MW: 30691.7 Da PI: 5.5851

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61001	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.5	1e-06	11	43	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++e+ + l+C+ ++ lC C ++ H+ OMO61001 11 TVPCDFCNEQIAVLYCRADSAKLCLFCDQHVHS 43 568***************************995 PP
2	zf-B_box	24	8.3e-08	54	98	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++ ++++ C +++ lC++C H + H+++p OMO61001 54 SQICDNCGTEPVSVRCATDNLVLCQECDWDAHGScsvsaaHDRTP 98 589*************************99995488888888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MVCPKPESNQ TVPCDFCNEQ IAVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC 60 GTEPVSVRCA TDNLVLCQEC DWDAHGSCSV SAAHDRTPVE GFSGCPSALE LASAWGFDLE 120 DKKPSDQSWN RCHQDLMMPT VESWVYKSSV QEMMVPYETF GYAEIVKQPS HGTGKSKQVI 180 FKQLVGLMKR DIMGGGGGGG ENLLPNAEAN GNALARQEVI QPQTQQQTQT QTPFTSLLMM 240 QTQGNDRMGD GGDVLWRNGN RNGQTPQVRF FLVFLLPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	5e-72	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO61001