PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61023

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 286aa MW: 32235.2 Da PI: 8.4213

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61023	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.7e-10	14	51	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++ +G g + R++k+c++rw +yl OMO61023 14 KGAWTKEEDQRLIDYIRAHGEG----------LLRCGKSCRLRWINYL 51 79****************99..........689*********97 PP
2	Myb_DNA-binding	59.9	5.5e-19	57	101	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ OMO61023 57 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 101 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR AHGEGLLRCG KSCRLRWINY LRPDLKRGNF 60 TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLISRG IDPQTHRPLN 120 ETTTITTHNM TNNTAKSTAP KPAATSAPNE LDFRNAPING FISATPSLEF KYKAKTESLE 180 EGNCSSSGMT TDEEHKYPSN GQGLNLELSI GIANDSTQLS TANSADSKPL LHHHHNHNTH 240 NFHFLGQTMV AKAVCLCWQL GFQGSEICRN CQNTNGFYRY CRPLDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	4e-83	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO61023