PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61487
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 239aa    MW: 26960.7 Da    PI: 5.8305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61487genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.55e-1413117191
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.............kvkaeekew...yfFskrdkkyatgkrknratksgyWk 84 
               lppGfrF+Pt++e+++++ ++ +e+  l++   i+ +d+y++ePw+L  k             k+k+e+ke+       k+++k++t+++ +r++  g Wk
  OMO61487  13 LPPGFRFKPTEQEILKYFVRPAIETGFLPF--PITCCDLYTSEPWNLFdKraadcfwiytplkKLKNENKEIsmsIATQKKKRKTKTKENIERTAGCGSWK 111
               79************************9999..79*************63468999999999886666777664234444555555567778889999**** PP

       NAM  85 atgkdke 91 
               ++   k+
  OMO61487 112 EKTL-KD 117
               6543.34 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MLRYFVDIGE SSLPPGFRFK PTEQEILKYF VRPAIETGFL PFPITCCDLY TSEPWNLFDK  60
RAADCFWIYT PLKKLKNENK EISMSIATQK KKRKTKTKEN IERTAGCGSW KEKTLKDIKD  120
CAGKLLGHGR MRVCILGPYA KLNINPILEK KPPNNINNNN SALVAASDTH KSKADSFGDD  180
DHEQGPIPKK PRLENATASG ASSLNDDFAS LDDDDEFLEY LCTVLTDSDE TQILECLLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-09NAC family protein