PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61624

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 263aa MW: 28742.8 Da PI: 8.3622

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61624	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H OMO61624 85 FSCNYCQRKFYSSQALGGHQNAH 107 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MESLRKEPSP SESTSCIIST PDEHQQQEAA KPRNLQLDLK LTTSSTNDFD EGFGPELNLI 60 DSLNTAAGSN SPETPQPSDA EQRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRGQRM 120 GAHIAASAAA FGHPYFHHNH YSSLASLPLH GGAYNRSLGI QVHSLIHKPN SHVSSSMGFG 180 SSYGHHGWSR PPIEQQPAIG KLSMENSNSR ASVGRFNITT TRTTMMGSPA DHEVIGNFWC 240 SSGASSLKTK QEEIQKVDLS LKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-46	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO61624