PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61641

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 362aa MW: 40154 Da PI: 4.6504

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61641	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130	1.8e-40	4	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lp G+rFhPtd +l++ +Lkkkv+gkkl+l e+i+++d+yk+ PwdLp+ +++ ++ +wyfF++ kkya+g++ nra + g Wkatgkdk+++s +g++ OMO61641 4 LPLGIRFHPTDVQLLKLFLKKKVQGKKLSL-EAIADLDVYKHAPWDLPRmaNLDPGNLRWYFFCPMVKKYARGNQLNRASDFGCWKATGKDKPIMS-RGKK 102 699************************9.89***********5224444666**********************************.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 g+ ktLvfy +ap+g+ dWv+ eyrl OMO61641 103 LGMMKTLVFYGVKAPQGVGRDWVIREYRL 131 ******99*************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MEELPLGIRF HPTDVQLLKL FLKKKVQGKK LSLEAIADLD VYKHAPWDLP RMANLDPGNL 60 RWYFFCPMVK KYARGNQLNR ASDFGCWKAT GKDKPIMSRG KKLGMMKTLV FYGVKAPQGV 120 GRDWVIREYR LDEEDKKLVE EGGIVQDYVL CVVCKKESPG DYQFAAPFIH DDEIDQVKNL 180 VWSGTDSGSG SGSSSGSGSN PASNLSSGLA SMDDMVIPES MESMEAPQVA DQVPIQVQSN 240 PIDNSLKSLS EIFGRDDEAI INNGNQGNCN FGLEQEAPQV AEEDYILSSL LAPYQVDFRN 300 NALESDFLEQ EVTRSSPPLG FWPPQTKYNS DNSWESQALR YGQGNHGGSS SNFIQGNGPS 360 NY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MEELPLGIRF HPTDVQLLKL FLKKKVQGKK LSLEAIADLD VYKHAPWDLP RMANLDPGNL  60
RWYFFCPMVK KYARGNQLNR ASDFGCWKAT GKDKPIMSRG KKLGMMKTLV FYGVKAPQGV  120
GRDWVIREYR LDEEDKKLVE EGGIVQDYVL CVVCKKESPG DYQFAAPFIH DDEIDQVKNL  180
VWSGTDSGSG SGSSSGSGSN PASNLSSGLA SMDDMVIPES MESMEAPQVA DQVPIQVQSN  240
PIDNSLKSLS EIFGRDDEAI INNGNQGNCN FGLEQEAPQV AEEDYILSSL LAPYQVDFRN  300
NALESDFLEQ EVTRSSPPLG FWPPQTKYNS DNSWESQALR YGQGNHGGSS SNFIQGNGPS  360
NY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.3	4e-42	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO61641