PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61649
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 226aa    MW: 25137.4 Da    PI: 6.5194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61649genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-18555155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
              ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  OMO61649  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
              59*****999.**********8.....334**********************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPVTKTTEH DDQVAGNNSD RIKGDDVESP LPAKALSELL NAKLKKCCKD QSPSLTCLRL  120
DTDNAHIGVW QKRAGGNRSS SNWVMRVELG NNNQKKMMMK PEEALMEDDG STLLSNSPMG  180
DDHEIIEGGS NNVLGEEDRI AMQMIEELLN WNCPTMMTST SSSGGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.12e-71ERF family protein