PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61984
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 194aa    MW: 21752.7 Da    PI: 5.7601
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61984genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122749123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y+C+ C++ Fs+   L  H++ H
  OMO61984 27 YECTFCKRGFSNAQALGGHMNIH 49
              99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MEESEKAEQE TSSEEQGQGA RSPARSYECT FCKRGFSNAQ ALGGHMNIHR RDKAKLKQAH  60
NSSSETNYSP HQSNLDNINV IPKSIIIPSS YSPTETTPGK WPWVNDHDHH DYVVDDHDHN  120
KRPDKTHVGE IRKLPLFDEK PSSITQENIL QPAASTTQVD EKGSSSSDDQ VDLELRLGPD  180
PQDSSPTITT KKFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-17C2H2 family protein