PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO62001

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 360aa MW: 38523.4 Da PI: 5.7602

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO62001	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95	5.9e-30	168	221	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl OMO62001 168 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 221 59*****************.******************************8 PP
2	Myb_DNA-binding	48.1	2.6e-15	170	220	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r+ WT+++++++vd+v+ lG + +ktI++ m+ +g+t++++ s++qky+ OMO62001 170 RLVWTPQLHKRFVDVVAHLGIKnaVPKTIMQLMNvEGLTRENVASHLQKYR 220 789*****************9*************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGEEVKMSEY EANGGDDEEV AAATITATAA VVDDDDEDDE RIVEWEMGLP NTDDITPLCQ 60 SLLPPELASA FSISPEPRRT AADVNRASQS TLSSLRSAGA HSSSTNNNNN NFRSFTDPMV 120 VEPEGDGSGS GSGSDPKKMR KMDVAEEADS AVRTTENSDD PSARTLKRPR LVWTPQLHKR 180 FVDVVAHLGI KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLS NEGPSPSDQL 240 FASTPVPQSL HESGSGGGGG GGGGGGSGAG GGSSANANGH MGMPIPMPYG APMMPVPMPM 300 YGHVGMHQGG YQHHHHHHHH QNGYEANPYG MMQQRDWSGG NKYGSVASYP HHMTPNDKLN

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGEEVKMSEY EANGGDDEEV AAATITATAA VVDDDDEDDE RIVEWEMGLP NTDDITPLCQ  60
SLLPPELASA FSISPEPRRT AADVNRASQS TLSSLRSAGA HSSSTNNNNN NFRSFTDPMV  120
VEPEGDGSGS GSGSDPKKMR KMDVAEEADS AVRTTENSDD PSARTLKRPR LVWTPQLHKR  180
FVDVVAHLGI KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLS NEGPSPSDQL  240
FASTPVPQSL HESGSGGGGG GGGGGGSGAG GGSSANANGH MGMPIPMPYG APMMPVPMPM  300
YGHVGMHQGG YQHHHHHHHH QNGYEANPYG MMQQRDWSGG NKYGSVASYP HHMTPNDKLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	1e-75	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO62001