PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO62470

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YC

Protein Properties

Length: 738aa MW: 80986.5 Da PI: 6.8228

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO62470	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.4	1.2e-54	557	660	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivpr OMO62470 557 QLQAFWASQyneIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 657 89***99889*************************************************************************************** PP NF-YC 99 del 101 ++l OMO62470 658 EDL 660 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MAFSFPSFLK STVLSLTLLA SLCFFFFLQF PTKPPVIPKR SLISSSSCYS QHSSDNSIIN 60 YLSLHYCLFN GKFSLSIPSL ALLILLHFYI LIKTAQSHFS IVTTKLSSLL NLSPSMAAVT 120 LLALGNGAPD VFASLHAVRT GQYRTGFGAI LSAGTFVSAF VVGFVAIYAA PFGVKPAPFI 180 RDVLFYLIGA LFLFYVYLSG EIFVWQAVGF VGFYLFFVGF VFWMDFGTEG EKEGKPVLEK 240 EMVTEDCRLL DKDCEIGNVE MSLKADKEAF GVAGVYPMIS KAWEVPISIL LKLTIPQTSP 300 SEWNRFYISA NIALCPLALL YACNSFMPLD HPIVFLLPNT RFPLWFVVLF ASFSLALLHF 360 ILEKEPPKSE QMPVVVVAFV MSVFWISTIA GELLNCLSAL GSILKLPPAL LGLTVLAWGN 420 SVGDLVADVA VAKAGHPAMA MAGCFAGPMF NMLVGLGTAL VVLNLPIKLQ YSLLKIGMDQ 480 QGHGQPPPMG MIGTGAQVPY GTNPYQNQVT GGPSPGSVVT SVGAIQSTSQ PTGAQIAQHQ 540 LAFQQNLHQQ QQQLQQQLQA FWASQYNEIE KVTDFKNHSL PLARIKKIMK ADEDVRMISA 600 EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL 660 KDEVLASIPR GTMPVGGPAD ALSYYMPPQH APPQVGTPGM IMGKPVIDPT MYAQQSHPYM 720 AQQMWPQGPE QQQSSSDH

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MAFSFPSFLK STVLSLTLLA SLCFFFFLQF PTKPPVIPKR SLISSSSCYS QHSSDNSIIN  60
YLSLHYCLFN GKFSLSIPSL ALLILLHFYI LIKTAQSHFS IVTTKLSSLL NLSPSMAAVT  120
LLALGNGAPD VFASLHAVRT GQYRTGFGAI LSAGTFVSAF VVGFVAIYAA PFGVKPAPFI  180
RDVLFYLIGA LFLFYVYLSG EIFVWQAVGF VGFYLFFVGF VFWMDFGTEG EKEGKPVLEK  240
EMVTEDCRLL DKDCEIGNVE MSLKADKEAF GVAGVYPMIS KAWEVPISIL LKLTIPQTSP  300
SEWNRFYISA NIALCPLALL YACNSFMPLD HPIVFLLPNT RFPLWFVVLF ASFSLALLHF  360
ILEKEPPKSE QMPVVVVAFV MSVFWISTIA GELLNCLSAL GSILKLPPAL LGLTVLAWGN  420
SVGDLVADVA VAKAGHPAMA MAGCFAGPMF NMLVGLGTAL VVLNLPIKLQ YSLLKIGMDQ  480
QGHGQPPPMG MIGTGAQVPY GTNPYQNQVT GGPSPGSVVT SVGAIQSTSQ PTGAQIAQHQ  540
LAFQQNLHQQ QQQLQQQLQA FWASQYNEIE KVTDFKNHSL PLARIKKIMK ADEDVRMISA  600
EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL  660
KDEVLASIPR GTMPVGGPAD ALSYYMPPQH APPQVGTPGM IMGKPVIDPT MYAQQSHPYM  720
AQQMWPQGPE QQQSSSDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	630	636	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	1e-75	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OMO62470