PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO62636
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 236aa    MW: 25647.6 Da    PI: 5.2564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO62636genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-173686155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              +++kGVr ++ +g+Wv+eIr p   ++++r++lg++ t++ Aa+a++aa ++l+g
  OMO62636 36 KKFKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPDAAARAYDAALLCLKG 86
              59*****998.**********9...336************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MVKSEHKIQP LETSKQIMSA TSTSPTSSSS SSCKKKKFKG VRMRSWGSWV SEIRAPNQKT  60
RIWLGSYSTP DAAARAYDAA LLCLKGSSAN LNFPITSSHY IPDTIMSPKS IQRVAAAAAN  120
SFVDNATINT TTSASAATPP ISPPPPSTSS SYSSSVSSPS MSSSPISDFQ VDDDVSLIQS  180
SFDEPSIPMM EPWYSSFDSL QSPKYVDQMF NVASFDPPTL IDDFYEEGDI RLWSFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.16e-35ERF family protein