PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO62693

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 387aa MW: 43759 Da PI: 6.6375

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO62693	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.7e-27	221	309	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY++Y+ ++GF +r++++++sk +g+i++r vC+keg+r++ +++ +k+ r+ra tr+gCka++ ++k++ gkw++tk+++eH+H+la OMO62693 221 FYSAYGMRMGFITRMNYHNRSKIDGSIVSRAIVCNKEGYRKPYRHD-VKNVRSRAPTRVGCKAMISIRKMSmGGKWVITKFVKEHTHPLA 309 9***************************************9999.***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MQNYNLKSLL TKILNLSKPK KKEPTFSKQK KKKKKKKIAA TRTLESLKEE TNGVEPDNDV 60 QLEETDNSTH GQLLDDLNDE NKFGNDVQLE EPDHGTHELV DDSPIKEIML GSDVRLKEID 120 NAIHGELLED STDNENELSD GDQLQQTDNY IPVDVLHNAT NNEHHLGKDG TIAGSSVQDV 180 SQVAQNDNTT QSSSVVQLTV VEGDEPYVGQ EFENEAAAHA FYSAYGMRMG FITRMNYHNR 240 SKIDGSIVSR AIVCNKEGYR KPYRHDVKNV RSRAPTRVGC KAMISIRKMS MGGKWVITKF 300 VKEHTHPLAG FQAPNQKAVI SNQIPNEDKR VQELTQQLLI ERKRSASLRR FIDLLFNHIE 360 EHTQGLAKRI QYIVDSVNKV ESEGSNR

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MQNYNLKSLL TKILNLSKPK KKEPTFSKQK KKKKKKKIAA TRTLESLKEE TNGVEPDNDV  60
QLEETDNSTH GQLLDDLNDE NKFGNDVQLE EPDHGTHELV DDSPIKEIML GSDVRLKEID  120
NAIHGELLED STDNENELSD GDQLQQTDNY IPVDVLHNAT NNEHHLGKDG TIAGSSVQDV  180
SQVAQNDNTT QSSSVVQLTV VEGDEPYVGQ EFENEAAAHA FYSAYGMRMG FITRMNYHNR  240
SKIDGSIVSR AIVCNKEGYR KPYRHDVKNV RSRAPTRVGC KAMISIRKMS MGGKWVITKF  300
VKEHTHPLAG FQAPNQKAVI SNQIPNEDKR VQELTQQLLI ERKRSASLRR FIDLLFNHIE  360
EHTQGLAKRI QYIVDSVNKV ESEGSNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	37	KKKEPTFSKQKKKKKKKK
2	30	36	KKKKKKK
3	31	37	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-66	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO62693