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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO62749 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | MYB | ||||||||
| Protein Properties | Length: 341aa MW: 39100.4 Da PI: 6.716 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd ll ++++++G g+W+ a++ g++Rt+k+c++rw++yl
OMO62749 28 RGPWTLEEDTLLTHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 75
89********************************************97 PP
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| 2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
OMO62749 81 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 124
7999******************.*********.***********96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 341 aa Download sequence |
MRAATMPMAP VPKTNMGSPS EDESELRRGP WTLEEDTLLT HYIARHGEGR WNMLAKCAGL 60 KRTGKSCRLR WLNYLKPDIK RGNLTPQEQL LILELHSKWG NRWSKIAQHL PGRTDNEIKN 120 YWRTRVQKQA RQLNIESNSK RFLEAVRCFW MPRLLQKVEQ TSSTSYSPSS FKEMTSSQSS 180 SAPYYQLSEN CTSNNIPSMS TTFSPLPNNS NHYSFENSSP VTWQSLYPPD FMNISEQSEE 240 IPQHLTSPNV YGHATFYNNN NNNNQNLYQS YNIDSSGYHD MEEGFSLASM SDVGSYEGSP 300 SGCQMAQGNW VSNEITDALW NNMDDIWQFR ELGGEMGNQK L |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G68320.1 | 2e-88 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO62749 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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