PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO62936

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 359aa MW: 40281.1 Da PI: 6.6592

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO62936	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	66.1	1.2e-20	60	202	3	124
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdskti.eWLlqqakpaikeltgt....................ssssaseceaesssssa 82 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk + Ll+ +p + + OMO62936 60 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLTQPSKFHqQMLLNSHEPNTPNSLPShpffdhatnsmfmkdhgedhD---------------- 144 79******************************************65268999999998887777787654333333333332220................ PP TCP 83 snsssg.....................kaaksaakskksqksaasalnlak.esrakararare 124 ++s++ k +++ ++++ + + + + + ++a a e OMO62936 145 -HQSKRfwdmevalrakskevekgkwvKVINDQ-----QEQQGNDQDGIGGgDYSDHQQAAAAE 202 .22222344444444444444433333111111.....12222212222222222222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MIYDERSKIM ISSTSRGKDA ETKQEGETND GKFSKGPPSS SRQWSGFRNP RIVRVSRSFG 60 GKDRHSKVCT IRGLRDRRIR LSVPTAIQLY DLQDRLGLTQ PSKFHQQMLL NSHEPNTPNS 120 LPSHPFFDHA TNSMFMKDHG EDHDHQSKRF WDMEVALRAK SKEVEKGKWV KVINDQQEQQ 180 GNDQDGIGGG DYSDHQQAAA AEASAQKLFP MANNNNNSSL LSNSMPFNPY YHWEPNSSLS 240 LSQFGNHGFL STQTENFLSG NNSAAHQLFF CPPPSTMPSL FPTYPPYVAT PTGDNSDSRQ 300 QINHFQLLSS NNSHHILPNS AGTMMRPNFS LNVNAGLSIH TQDDDDQSHA DDDQDNTDS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MIYDERSKIM ISSTSRGKDA ETKQEGETND GKFSKGPPSS SRQWSGFRNP RIVRVSRSFG  60
GKDRHSKVCT IRGLRDRRIR LSVPTAIQLY DLQDRLGLTQ PSKFHQQMLL NSHEPNTPNS  120
LPSHPFFDHA TNSMFMKDHG EDHDHQSKRF WDMEVALRAK SKEVEKGKWV KVINDQQEQQ  180
GNDQDGIGGG DYSDHQQAAA AEASAQKLFP MANNNNNSSL LSNSMPFNPY YHWEPNSSLS  240
LSQFGNHGFL STQTENFLSG NNSAAHQLFF CPPPSTMPSL FPTYPPYVAT PTGDNSDSRQ  300
QINHFQLLSS NNSHHILPNS AGTMMRPNFS LNVNAGLSIH TQDDDDQSHA DDDQDNTDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-32	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO62936