PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63061
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family G2-like
Protein Properties Length: 400aa    MW: 45023.1 Da    PI: 7.8978
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63061genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.4e-31225279155
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  OMO63061 225 KTRIRWTQDLHDKFVECVKRLGGAEKATPKAILKLMDTEGLTIFHVKSHLQKYRI 279
               68****************************************************7 PP
2Myb_DNA-binding48.52e-15229278348
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                      rWT+++++++v++vk+lGg    t+k+I + m  +g+t  ++ks++qky+
         OMO63061 229 RWTQDLHDKFVECVKRLGGAekaTPKAILKLMDtEGLTIFHVKSHLQKYR 278
                      9*****************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MNTQKLGCQE HLDQSLGFSS RDCNFEYVNH IGFQQPNWNN MGIRIPMEGG LQQQNSGNKS  60
SNTIIGGFQS PASAFYATER CMGFSQYGTS SSSFQGSGDN FSMESVGQDE PNYELRNTLQ  120
SLVKSQICYN QFQKSSPEKG YKNIPGNNLQ GSHQVSSHDQ SNLIKNQFSV PFRNQDQRGY  180
CNSYNSPLAH LSIFQQEKQS SNYPSGNFSV SSGNPVPSGA VLASKTRIRW TQDLHDKFVE  240
CVKRLGGAEK ATPKAILKLM DTEGLTIFHV KSHLQKYRIA KYMPDSAEGK SERRNSSSDV  300
TQFDVKTGMH LTEALQLQLD VQRRLHEQLE IQRNLQLRIE EQGKQLKMMI DQQQKTNESL  360
LKKQKLDVQS LDHDPSFSLD DIEVSIAESS GQVHFPSKIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-78G2-like family protein